Discussion Post
• What is CIGAR string? How is it generated and where will you find it?
• What is BAI file and how is it made? Be specific?
• Compare and contrast FASTA and FASTQ files
• What is the relationship between SAM,BAM, and BAI? how is each of these generated? What information do they contain and why are they useful?
• Using pseudocode, describe an algorithm that searches for all instances of ATC in a given sequence. What do you think the BigO will be for this algorithm and why?
The response must include a reference list. Using Times New Roman 12 pnt font, double-space, one-inch margins, and APA style of writing and citations.